• Assigning the unassigned: A signature-based classification of rDNA metabarcodes reveals new deep-sea diversity 

      Barrenechea Angeles, Inés; Nguyen, Ngoc-Loi; Greco, Mattia; Tan, Koh Siang; Pawlowski, Jan (Journal article; Tidsskriftartikkel; Peer reviewed, 2024-02-29)
      Environmental DNA metabarcoding reveals a vast genetic diversity of marine eukaryotes. Yet, most of the metabarcoding data remain unassigned due to the paucity of reference databases. This is particularly true for the deep-sea meiofauna and eukaryotic microbiota, whose hidden diversity is largely unexplored. Here, we tackle this issue by using unique DNA signatures to classify unknown metabarcodes ...
    • Decadal trend of plankton community change and habitat shoaling in the Arctic gateway recorded by planktonic foraminifera 

      Greco, Mattia; Werner, Kristin; Zamelczyk, Katarzyna; Rasmussen, Tine Lander; Kucera, Michal (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-12-16)
      The Fram Strait plays a crucial role in regulating the heat and sea-ice dynamics in the Arctic. In response to the ongoing global warming, the marine biota of this Arctic gateway is experiencing significant changes with increasing advection of Atlantic species. The footprint of this ‘Atlantification’ has been identified in isolated observations across the plankton community, but a systematic, ...
    • The effect of an experimental decrease in salinity on the viability of the subarctic planktonic foraminifera Neogloboquadrina incompta 

      Greco, Mattia; Meilland, Julie; Zamelczyk, Kasia; Rasmussen, Tine Lander; Kucera, Michal (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-27)
      Chemical signatures in the calcite of shells of polar and subpolar planktonic foraminifera have been frequently used to trace and quantify past meltwater discharge events. This approach assumes that the foraminifera can tolerate low salinity under extended periods. To obtain a first experimental constraint on salinity tolerance of Subarctic foraminifera, we carried out a culturing experiment with ...
    • The FORCIS database: A global census of planktonic Foraminifera from ocean waters 

      Chaabane, Sonia; de Garidel-Thoron, Thibault; Giraud, Xavier; Schiebel, Ralf; Beaugrand, Grégory; Brummer, Geert-Jan; Casajus, Nicolas; Greco, Mattia; Grigoratou, Maria; Howa, Hélène; Ofstad, Siri; Jonkers, Lukas; Kucera, Michal; Kuroyanagi, Azumi; Meilland, Julie; Monteiro, Fanny; Mortyn, Graham; Almogi-Labin, Ahuva; Asahi, Hirofumi; Avnaim-Katav, Simona; Nassinot, Franck; Davis, Catherine V.; Field, David B.; Hernández-Almeida, Iván; Herut, Barak; Hosie, Graham; Howard, Will; Jentzen, Anna; Johns, David G.; Keigwin, Lloyd; Kitchener, John; Kohfeld, Karen E.; Lessa, Douglas V. O.; Manno, Clara; Marchant, Margarita; Ortiz, Joseph D.; Post, Alexandra; Rigual-Hernandez, Andres; Rillo, Marina C.; Robinson, Karen; Sagawa, Takuya; Sierro, Francisco; Takahashi, Kunio T.; Torfstein, Adi; Venancio, Igor; Yamasaki, Makoto; Ziveri, patrizia (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-06-03)
      Planktonic Foraminifera are unique paleo-environmental indicators through their excellent fossil record in ocean sediments. Their distribution and diversity are affected by different environmental factors including anthropogenically forced ocean and climate change. Until now, historical changes in their distribution have not been fully assessed at the global scale. Here we present the FORCIS ...
    • Sedimentary ancient DNA: a new paleogenomic tool for reconstructing the history of marine ecosystems 

      Nguyen, Ngoc-Loi; Devendra, Dhanushka; Szymanska, Natalia; Greco, Mattia; Barrenechea Angeles, Inés Andrea; Weiner, Agnes K. M.; Ray, Jessica Louise; Cordier, Tristan; De Schepper, Stijn; Pawłowski, Jan; Pawłowska, Joanna (Journal article; Tidsskriftartikkel, 2023-06-09)
      Sedimentary ancient DNA (sedaDNA) offers a novel retrospective approach to reconstructing the history of marine ecosystems over geological timescales. Until now, the biological proxies used to reconstruct paleoceanographic and paleoecological conditions were limited to organisms whose remains are preserved in the fossil record. The development of ancient DNA analysis techniques substantially expands ...
    • Uncovering hidden structures: previously undescribed pseudopodia and ectoplasmic structures in planktonic foraminifera 

      Greco, Mattia; Westgård, Adele; Sykes, Freya Elizabeth; Mohamed, Mohamed Mahmoud Ezat Ahmed; Meilland, Julie (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-07-05)
      The trophic strategies of cold-water planktonic foraminifera are not well understood due to the challenge of culturing them in polar conditions. Here, we identify previously unknown ectoplasmic and cytoplasmic projections in three species of planktonic foraminifera thriving in polar and subpolar marine environments: Globigerina bulloides, Neogloboquadrina incompta and Neogloboquadrina pachyderma. ...